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Ruminants
- Pronghorn, Bighorn Sheep, Deer and others.
- Landscape-level studies, population genomics, genetics for migration ecology, and disease ecology.
- Collaborative research, toward conserving and managing populations across migration corridors and habitats

Birds
- Hummingbird Health Program.
- Hummingbird Conservation Genomics and Disease Ecology
- Raptors: Great Gray Owls and others.
- Genetic diversity, population structure, small threatened populations, migration ecology.
- Identifying and monitoring threats to bird populations.
- Citizen science.

Carnivores
- Mountain lion, Bear, Sea Otter, and others.
- Non-invasive and trace DNA, population size estimates, bottlenecks, source-sink dynamics.
- Molecular kinship reconstruction, genetic diversity, genomics, landscape genetics.
- Assessing impacts of disease on populations